I think you picked a great time to visit the Bay Area (just after a short heat wave :). I'm a native of San Francisco (now live in the East Bay). I didn't see Golden Gate Park in your itinerary, hopefully you get there and get to see everything. Too bad the Steinhart Aquarium/Academy of Sciences isn't reopened yet, but the DeYoung Museum is open. You should be sure to see the Conservatory of Flowers (in a Victorian era greenhouse), the Strybing Arboretum, and the Japanese Tea Garden. For an excellent view of the Golden Gate Bridge, drive up to the Palace of the Legion of Honor at Lincoln Park, one of my favorite views in SF. Also the Presideo is a nice drive. I could go on, but you'd run out of time!!